However, programming knowledge is not required to follow the workshop. So, during this workshop you will write code using the macro language. During this workshop we will see how to select a directory using the macro language, how to write a macro to analyse the data and how to reuse code. The macro language is a powerful tool to analyse large data sets. The second day is a workshop introducing the ImageJ macro language which can be used for automated image analysis in imageJ/Fiji. Writing macros in ImageJ Tuesday 12 December During this day there will be lectures and hands-on sessions on the basics of ImageJ/Fiji and we will have a closer look at a selection of macros and plugins.Īfter the workshop there will be time to discuss individual questions concerning image analysis using ImageJ/Fiji on own data. The aim of this day is to familiarize you with the use of the ImageJ/Fiji menus, plugins and macros for digital image processing and where to find information about its use. Please be aware, participants have to bring their own laptop! Content and program Introduction to ImageJ/Fiji Monday 11 DecemberĪ one day introduction workshop for ImageJ/Fiji. Experience with ImageJ is not required, but a basic understanding of the use of a computer/laptop is an advantage. During the workshops you will get an introduction into the use of ImageJ/Fiji for digital image processing, but the workshops are mostly focused on biological examples. The workshops are open to internal and external participants, including industry and business participants, who want to use or have started to use ImageJ for image analysis but need a little help to make best use of the software. The workshops are for scientist and non-scientists who are interested to use ImageJ/Fiji for image analysis. Applicants from the University of Leicester - Download the form (PDF, 80kb)Įxternal applicants - Download the form (PDF, 65kb).For the workshop I would advise to install Fiji, as some things are easier to do in Fiji, but you can use plain ImageJ as well. Fiji (Fiji stands for Fiji is Just ImageJ) is a distribution of ImageJ focused on 3D image reconstruction and analysis. There is a very active ImageJ community and ImageJ is continuously improved. It is freely available and used by many scientists around the world. ImageJ is a public domain image processing and analysis program written in Java.
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